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Royal Society Open Science

The Royal Society

Preprints posted in the last 30 days, ranked by how well they match Royal Society Open Science's content profile, based on 193 papers previously published here. The average preprint has a 0.14% match score for this journal, so anything above that is already an above-average fit.

1
Estimating Lifetime Periodontal Burden Under Informative Tooth Loss

McCormick, K. M.; Amarasena, N.; Guzzo, G.

2026-05-30 dentistry and oral medicine 10.64898/2026.05.27.26354300 medRxiv
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Background: Periodontitis is defined by cumulative, irreversible tissue destruction, yet population-based measurement typically relies on cross-sectional indicators derived from retained teeth. Destruction that occurred earlier in life, particularly disease severe enough to result in tooth loss, is structurally excluded from these measures, potentially leading to systematic underestimation of lifetime periodontal burden. Objective: To develop and evaluate a measurement framework that estimates lifetime periodontal burden from cross-sectional data by explicitly incorporating informative tooth loss under etiological uncertainty. Methods: Data were drawn from 10,324 adults aged [≥]30 years participating in the 20090-2016 National Health and Nutrition Examination Survey (NHANES) who completed full-mouth periodontal examination and glycated hemoglobin (HbA1c) testing. Lifetime periodontal burden was estimated by combining observed clinical attachment loss in retained teeth with probabilistic contributions from missing teeth, using three alternative age-stratified attribution schedules derived from epidemiological studies of periodontal extraction. Performance was compared with conventional measures of periodontal severity and extent using distributional analyses, correlations with HbA1c, discrimination of diabetes status, and relative importance analysis. Age-adjusted models were treated as sensitivity analyses. Results: Estimated lifetime periodontal burden exhibited strong, monotonic age gradients across glycemic categories, in contrast to more attenuated patterns observed for severity and extent. Across attribution schedules, lifetime burden showed stronger correlations with HbA1c ({rho} = 0.30-0.32) than conventional measures. In multivariable models including all indices, lifetime burden retained an independent association with HbA1c, whereas severity and extent contributed little unique information. Discriminative performance for diabetes status was consistently higher for lifetime burden than for conventional measures and remained stable across attribution schedules. Conclusions: Lifetime periodontal burden can be estimated from cross-sectional data by explicitly modelling informative tooth loss rather than restricting measurement to retained teeth. Incorporating historical tissue loss under uncertainty yields a more coherent representation of cumulative periodontal destruction than snapshot-based measures and provides a methodological basis for life-course-oriented periodontal epidemiology.

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A new skeleton of the gorgonopsian Aelurognathus tigriceps from the Daptocephalus Assemblage Zone (Karoo Basin, South Africa) with novel insights into the pelvic girdle, hind limbs, and tail

Pevsner, S. K.; Benson, R. B. J.; Kammerer, C. F.

2026-05-30 paleontology 10.64898/2026.05.27.727204 medRxiv
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Gorgonopsian therapsids represent a transitional condition in the evolution of synapsid locomotion and postcranial structure. Most descriptions of gorgonopsians have focused on cranial material, however, limiting their usefulness for informing patterns of postcranial evolution on the mammal stem. While some recent work has begun to focus on postcrania, especially the pectoral girdle and forelimbs, comparatively little data are available on the pelvic girdle, hind limbs and tail. We report a new specimen of the late Permian gorgonopsian Aelurognathus tigriceps comprising a partial skull and well-preserved postcranial skeleton, including the near-complete series of dorsal vertebrae and ribs, complete pelvic girdle, hind limbs, feet, and a nearly complete tail. The tail is longer than any other published gorgonopsian. The new material presented here provides an opportunity to better establish broader patterns of morphology in the gorgonopsian postcranial skeleton.

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Cross-Sectional Measures of Periodontal Severity: Distortion from Severity-Dependent Tooth Loss

McCormick, K. M.; Amarasena, N.; Guzzo, G.; Nath, S.; Jamieson, L.

2026-05-30 dentistry and oral medicine 10.64898/2026.05.27.26354277 medRxiv
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Aim: Cross-sectional summaries of periodontitis based on clinical attachment loss (CAL) are, by definition, conditioned on surviving teeth. Because the most severely affected teeth are more likely to have been lost, these measures may underestimate cumulative disease burden and show an artificial flattening (attenuation) of severity with age. We hypothesised that measures more sensitive to severe attachment loss would show greater attenuation at older ages than measures defined across a broader range of sites. Materials and Methods: Using nationally representative data from adults aged 30+ years in NHANES 2009-2014, we examined age-specific trajectories across multiple continuous measures of periodontal severity and assessed whether divergence between measures followed the pattern predicted under severity-dependent tooth loss. Results: The proportion of observable sites declined from 93% at ages 30-34 to 68% at 80+ years, establishing the structural basis for the divergence observed across severity measures. All severity measures showed nonlinear attenuation with age, with distortion increasing with severity threshold. Higher-threshold measures exhibited the greatest attenuation, while lower-threshold measures showed more stable trajectories. Conclusions: Cross-sectional summaries of periodontitis reflect disease among surviving teeth rather than cumulative damage across teeth originally at risk. Attenuation at older ages is consistent with depletion of the most severely affected teeth rather than biological slowing. Distortion varies by measure, with higher-threshold and mean-based indices most affected, whereas the CAL 3+ mm threshold provides a more stable basis for age comparisons.

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The use of generative artificial intelligence applications by undergraduate dental students

Brondani, M.; Garbin, J. R.; Soheilipour, S.; Lee, V.

2026-06-02 dentistry and oral medicine 10.64898/2026.05.25.26353910 medRxiv
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Background: Higher education has been transformed by the rapid integration of generative artificial intelligence (GenAI) tools into academia. The objective of the present study was to examine how and for what purposes senior undergraduate dental students use GenAI tools in academic assignments. Methods: This cross-sectional study uses data from three written assignments submitted by two consecutive cohorts of graduating fourth-year dental students at the Faculty of Dentistry at the University of British Columbia, for a total of 120 students. The assignments focused on different subjects where students had to offer their views, including community water fluoridation. When using GenAI, students were asked to disclose whether and how such tools were used, and for what purpose. Descriptive statistics (e.g., means, frequencies, and proportions) were conducted via IBM SPSS Statistics (Version 27.0). Results: From the two cohort of students, 102 (85%) disclosed the use of GenAI tools in at least one assignment; of these, 69 (67.6%) reported using these tools in all three assignments. ChatGPT was by far the most frequently used GenAI tool, reported by 89 students (87.2%). Nine students (8.8%) did not specify which tool they had used. The majority of the students (91.2%, n = 93) reported using GenAI for proofreading or grammatical editing. About 9.8% of the students (n = 10) reported more substantive uses, such as relying on GenAI to generate in part or in full the assignment, and/or assessing the credibility of references. Conclusions: In our study, the use of GenAI tools was highly prevalent among senior undergraduate dental students for editorial purposes. A smaller but notable proportion of students engaged in more substantive uses that may carry academic and ethical risks. There is a need for structured AI literacy training and clear, dentistry-specific guidelines to promote responsible and transparent use while safeguarding critical thinking, academic integrity, and professional judgment in dental education.

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Winter forecasting of respiratory viruses in Victoria Australia

Henderson, A. S.; Moss, R.; Adekunle, A. I.; Ye, H.; O'Hara-Wild, M.; Eales, O.; Senior, K. L.; Tobin, R.; Windecker, S. M.; golding, N.; Robinson, E.; Strachan, J.; Hyndman, R. J.; Dawson, P.; McCaw, J.; McBryde, E.; Shearer, F. M.

2026-05-21 epidemiology 10.64898/2026.05.18.26353544 medRxiv
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Temperate regions of the world, such as southern Australia, often experience increased health burden from respiratory pathogens during winter. The ability to forecast short-term trends in cases of these pathogens is of significant interest to public health. Across the 2024 southern hemisphere winter period, the Australia--Aotearoa Consortium for Epidemic Forecasting and Analytics (ACEFA) ran a pilot respiratory virus forecasting initiative in collaboration with the Victorian Department of Health. Each week from the 9th of May 2024 through to 12th September 2024, the consortium solicited 28-day forecasts of daily case incidence for influenza, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and respiratory syncytial virus (RSV) from multiple research groups. Four component model forecasts were contributed by three different research groups, with a fourth group utilising the component forecasts to generate ensemble forecasts (making a total of six models, four component models and two ensembles). Here we statistically evaluated the performance of each forecast and a baseline model against the observed case data. The two ensemble models were found to be frequently the top performing models. All models performed worse than the baseline model around the epidemic peaks for each pathogen.

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Social control, not service quality, explains fast growth in the cleaner wrasse Labroides dimidiatus.

Pessina, L.; Bshary, R.

2026-05-19 animal behavior and cognition 10.64898/2026.05.16.725469 medRxiv
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Interactions between cleaner fish Labroides dimidiatus and client fish, from which cleaners remove ectoparasites and mucus, represent a textbook example of mutualism involving sophisticated strategic decision-making. However, cleaners must also face intraspecific social challenges within a size-based hierarchy, where the largest females may eventually change sex and become males with higher reproductive rates. Following 540 individuals over 11 months, we found that, contrary to expectations, slow-growing females spent more time cleaning and cheated more frequently, without causing more negative client responses than fast-growing females did. Instead, variation in growth was best explained by social factors: fast-growing individuals experienced reduced social control, while slow growers spent more time in proximity to dominant individuals. As there was no evidence that spawning activity affected growth patterns, it appears that fast growth as a viable strategy for becoming a male largely depends on the lack of control by dominants.

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Unpredictable Motion Shapes Sensing Behaviors Across Timescales

Cadigan, S. C.; Smith, N. A.; Jones, T.; Wohlgemuth, M.

2026-05-21 animal behavior and cognition 10.64898/2026.05.18.726036 medRxiv
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Locating, tracking, and intercepting objects is a fundamental behavior for many organisms. For instance, predators must track and capture erratically moving prey for their survival. Using the echolocating bat as a model species, we investigate how short-term changes in target motion predictability affect longer-term motor plans when tracking a prey item. We used a paradigm where prey motion is under experimental control, and then applied computational methods to characterize how target motion predictability influences short- and long-term behavioral control. We find that target motion predictability during the tracking phase of insect capture influences both short-term changes in sonar call control, as well as longer-term behavioral control for transitioning between hunting phases. For changes in immediate behavioral control, bats produce more bursts of calls at a higher rate when tracking unpredictable moving prey, an indication that the bat is collecting more information about the targets motion for unpredictable than predictable trials. In terms of longer-term behavioral control, target motion unpredictability delays the transition from tracking to capture phase behaviors. We suggest that the bat does this to collect more information about target motion to time the transition from tracking to capture behaviors for hunting success. Additionally, we find the effects of target motion unpredictability are first seen as changes in the vocal motor plan and then the auditory motor plan (ear motion), hinting at a sequencing of motor changes that warrant further investigation. SummaryWhen presented with a more challenging hunting task, bats will increase their production of bursts of calls at a higher rate and delay their transition into capture behaviors.

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Population-specific drivers of reproductive phenology in a widespread large carnivore, the gray wolf

Hennelly, L. M.; Shrotriya, S.; Khan, S.; Mohammadi, A.; Farhadinia, M. S.; Llaneza, L.; Bump, J.; Homkes, A.; Windels, S.; Islam, M. Z.; Jhala, Y. V.; Lopez-Bao, J. V.; Roffler, G. H.; Godbole, M.; Ghorpade, I.; Comizzoli, P.; Songsasen, N.; Sand, H.; Wikenros, C.; Wabakken, P.; Zimmermann, B.; Mahoney, P.; Stahler, D.; Stahler, E.; Metz, M.; Cassidy, K.; Gable, T.; Habib, B.

2026-05-26 ecology 10.64898/2026.05.25.727694 medRxiv
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Animals often rely on cues from the environment to time reproduction with optimal conditions. However, for most species, which environmental cues are used and how their use varies across a species distribution remains poorly understood. The gray wolf (Canis lupus) is found across a broad latitudinal range (12{degrees}N to 83{degrees}N) and diverse natural habitats, making them an ideal study species to explore these questions. Using 1,261 estimated birth dates of wild and captive wolves across their global range, we investigated how environmental variables influence reproductive phenology in this widespread large carnivore. Birth dates for wild wolves ranged from November 22nd for Indian wolves (18{degrees}N) to June 15th for Arctic wolves (80{degrees}N). The best predictor of timing of birth was increasing daylength during the mating season, followed by precipitation variability during the year. The timing of birth in captive wolves was highly similar to wild wolves at same latitudes, suggesting they use similar environmental cues to time reproduction. Near the equator where photoperiod is more stable, wolves remained seasonal and likely use climatic cues to time reproduction. Our work reveals populations may use different environmental cues to time reproduction, a characteristic that likely facilitates adaptation to diverse environments.

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Scaling and ecomorphology of lagomorph body shape and appendicular skeleton

Huizenga, C.; Brice, N.; Law, C. J.

2026-05-12 evolutionary biology 10.64898/2026.05.07.723560 medRxiv
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The diversity of body shapes is one of the most prominent features of phenotypic variation in mammals. Yet, mammalian body shapes are poorly quantified and the underlying components contributing to its diversity as well as its relationship to other components of the skeleton are rarely tested. Here, we use lagomorphs (hares, rabbits and pikas) as a model system to (1) investigate which components of the skeleton contributed the most to body shape diversity, (2) examine the relationships between body shape and relative limb lengths, and (3) test how body size, ecotype, burrowing behavior, and locomotor mode influenced variation in lagomorph body shape and appendicular morphology. We quantified the body shape and functional proxies of the appendicular skeleton in 40 lagomorph species from osteological specimens held at museum collections. Using phylogenetic comparative methods, we found the relative length of the ribs and elongation or shortening of the thoracic and lumbar regions contributed the most to body shape evolution across lagomorphs. Second, we found that only leporids (hares and rabbits) exhibited a significant relationship between limb length and body shape, where more elongate species exhibit relatively shorter forelimbs and hindlimbs. Lastly, we found that models incorporating body size were the best predictors of lagomorph body shape and the majority of the appendicular traits, whereas models incorporating burrowing behavior and locomotor mode were largely poor fits. Broadly, these results indicate that larger lagomorphs tend to exhibit more robust body shapes with longer, more gracile forelimbs, whereas smaller lagomorphs tend to exhibit more elongate body shapes with shorter, more robust forelimbs. Overall, this work contributes to the growing understanding of mammalian body shape evolution and demonstrates the importance of not omitting body size in ecomorphological analyses.

10
ctSpyderFields: A Python package for visual field reconstruction in spiders

De Agro, M.; Caradonna, D.; Pande, A.; Falotico, E.; Sumner-Rooney, L.

2026-05-29 bioinformatics 10.64898/2026.05.28.728173 medRxiv
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1The measurement of visual fields in arachnology has a long-standing history. Given the wide variety of eye positions, orientation and structure, the topic is fundamental for studies of taxonomy, evolution, ecology and behavior. The existing methods for measuring visual fields deploy ophthalmoscopic measurements, which require custom microscopes, anatomical structures like the reflective tapetum, which may not always be present, or the capacity to detect photoreceptor autofluorescence. Here we present the ctSpyderFields python package: a tool for geometrically predicting the visual fields of arachnids from digital images of the lens and retina. The tool uses images coming from computed tomography (CT) scans of specimens, but could be applied to other 3D microscopy techniques, to virtually project the boundaries of the retina through the geometrically predicted nodal point of the lens, deriving a rough per-eye visual field both in cartesian and spherical coordinates. The extracted data can then be used to calculate likely visual field overlap between eyes and angular spans, which can be compared within or between species. We also provide a use case, reporting the visual field data extracted from a museum specimen of Philaeus crysops. We propose that the tool will allow a wider comparative analysis of visual fields across spider species, unlocking the potential for a deeper understanding of visual ecology and evolution.

11
Monkey hear, monkey do what? An application of Automated Behavioural Response systems for hypothesis testing in the worlds smallest monkey

Barker, L.; Papworth, S. K.

2026-06-01 animal behavior and cognition 10.64898/2026.05.28.728389 medRxiv
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Observer effects are a frequent problem in animal behaviour studies, particularly when assessing responses to human disturbance. Automated Behavioural Response (ABR) systems, which combine camera traps with automated sound playbacks, offer a solution but have been primarily used on large terrestrial mammals. Here, we demonstrate their use in a small ([~]110g) arboreal primate, the eastern pygmy marmoset (Cebuella niveiventris). We conducted two playback experiments to test the risk-disturbance and distracted prey hypotheses. The marmosets exhibited strong anti-predator responses to avian predator calls, including increased fleeing and vocalisations. Human speech elicited similar but weaker responses, indicating that pygmy marmosets do not perceive raptors and humans as equivalent threats. Embedding predator calls into anthropogenic noise reduced vocal responses, suggesting that anthropogenic noise interferes with responses to predation cues. Across five weeks, we generated 128 successful experimental trials, demonstrating that ABRs can rapidly produce sample sizes sufficient for hypothesis testing in the field.

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Adherence to data-sharing policies - a comparison of the BMJ with other major medical journals

Avenell, A.; Bishop, D.

2026-05-21 medical ethics 10.64898/2026.05.15.26353284 medRxiv
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Background: In 2024, the BMJ updated its data-sharing policy for clinical trials, requiring deidentified individual patient data (IPD) to be openly deposited prior to publication. Our objective was to discover if data-sharing increased after introduction of the new policy. Method: All data-sharing statements were downloaded from BMJ trials published in 2023 (submitted pre-updated policy) and 2025 (submitted post-updated policy). Data for 2025 were gathered for trials in five comparison medical journals. Data-sharing statements were coded to specify whether IPD were immediately available, and if not, the reason why. Where a statement gave a link to a repository, we checked whether data were available. Results: Openly available IPD for BMJ trials increased from 0/32 prior to the new policy to 19/33 (58%) after the updated policy; seven articles gave repository links that did not yield any data. In the five comparison journals, rates of open IPD varied from 0% to 5.6%. Conclusions: There was a substantial increase in open sharing of IPD after introduction of the new policy compared to a prior period. Open sharing of IPD is possible, but it is unpopular with authors and is unlikely to be achieved without firm editorial enforcement

13
microRNA expression during early development in the coral Acropora digitifera

Grinblat, M.; Fridrich, A.; Cooke, I.; Moran, Y.; Huerlimann, R.; Brunner, R.; Andrade, N.; Ueda, N.; Ball, E.; Miller, D. J.

2026-05-13 developmental biology 10.64898/2026.05.09.724056 medRxiv
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Acropora spp. are the dominant reef-builders of the Indo-Pacific but are also amongst the most stress-sensitive corals. For these reasons, Acropora spp. have become the most studied of corals, two species (A. digitifera and A. millepora) often essentially serving as the basis for understanding molecular responses and processes across the sub-order Refertina and corals in general. The early development of these species has been well-characterised in terms of morphology and gene expression but as yet we have a limited understanding of how transcription is regulated during development. In "higher" animals (bilaterians) microRNAs (miRNAs) are critical regulators of gene expression but until now their involvement in coral development has not been investigated. Building on the existing developmental data for Acropora spp., we catalogued microRNAs (miRNAs) expressed during the early development of Acropora digitifera and profiled their expression in 21 stages from unfertilised eggs to 24h after treatment with a natural settlement cue (CCA chips). 157 miRNAs were recognised, many of which ([~]60%) were novel. These fell into three distinct groups, corresponding to three distinct developmental phases: (1) those present in eggs through to gastrulation (2) a larvally expressed group and (3) those expressed following settlement induction. Exposure of competent larvae to a natural settlement inducer resulted in major changes in the miRNA profile within 10 minutes, indicating that miRNAs may be particularly important in mediating the larva/polyp transition but are also likely to play important regulatory roles throughout early coral development in addition to possible roles in disease resistance.

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The lost vultures of Romania: reconstructing two centuries of decline from historical records (Gyps fulvus, Aegypius monachus, Neophron percnopterus, Gypaetus barbatus)

Osvath, G.; Denes, A. L.; Kovacs, Z.; Birau, A. C.; Papp, E.; Jako, G. V.; Zeitz, R.

2026-05-18 zoology 10.64898/2026.05.13.723308 medRxiv
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Romania represents one of the few European Union member states in which all four Old World vulture species historically maintained breeding populations: the Griffon Vulture (Gyps fulvus), Cinereous Vulture (Aegypius monachus), Egyptian Vulture (Neophron percnopterus) and Bearded Vulture (Gypaetus barbatus). Until the 2026 reintroduction efforts initiated by Foundation Conservation Carpathia and Rewilding Romania, Romania remained the last EU country whose former vulture guild had not been targeted for active recovery. Despite this exceptional significance in a European conservation context, no comprehensive synthesis of the historical and contemporary distribution of these species in Romania has been undertaken. We conducted a comprehensive review to gather all available vulture occurrence data and present a fully georeferenced database of 1,170 occurrence records spanning 1818-2025. We systematically searched museum collections, historical ornithological literature, modern field surveys and citizen-science platforms. The database documents substantial breeding populations across the Carpathian arc and Dobrogea until the early twentieth century, followed by near-total breeding collapse between the 1920s and 1960s driven by persecution, secondary poisoning and agrarian transformation. In total, 149 confirmed or probable breeding records have been documented for the four species combined, with the most recent confirmed breeding records dating to 1929 (Gyps fulvus), 1929 (Gypaetus barbatus), 1942 (Aegypius monachus) and 1966 (Neophron percnopterus). Non-breeding occurrences increase markedly after 2010, consistent with dispersal from expanding Balkan source populations. The F[a]g[a]ra {square} and Retezat Mountains emerge as the historically most important breeding strongholds for all four species. Our dataset constitutes the most detailed historical baseline currently available for vulture conservation in Romania and is intended to identify key historical sites with high potential for future reintroduction and recovery. Our results show that Romania historically supported the full guild of European obligate scavengers, and that its collapse occurred within barely four decades (1920s-1960s). The dataset highlights the value of reconstructing historical baselines in regions where functional extinction preceded the onset of modern monitoring, and provides an empirical foundation for reassembling a keystone scavenger guild at a continental scale.

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Comparative morphology of silk-spinning systems in amphipods

McKim, S.; Turner, T. L.

2026-05-12 evolutionary biology 10.64898/2026.05.07.723571 medRxiv
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Silk glands have been found in two groups of amphipods: the Corophiida and the Ampeliscidae. The silk glands in Ampeliscidae, however, have yet to be examined in detail. Here we report, for the first time, the morphology and distribution of pereopodal glands in the Ampeliscidae, in non-thread producing Synopiidae, and in the Paragammaropsidae. In the Ampeliscidae we found two gland types distributed throughout all pereopods which have the ability to create threads. Pereopods three and four have additional silk extrusion morphology at the tip of the dactylus in which silk is transformed into semi-cylindrical threads used for building domiciles. Synopiid outgroup species have one of the gland types but lack silk extrusion morphology. Using ancestral state reconstruction analysis, we find that glands in the Synopiidae are likely ancestral and hypothesize that silk glands in Ampeliscidae are derived from these ancestral glands. Silk-spinning pereopods in the Paragammaropsidae had similarities with both Corophiida and Ampeliscidae but had distinctions. Ampeliscidae silk-spinning systems bear surprising resemblance to the Corophiida which presents one to reconsider the taxonomic placement of Ampeliscidae and the origins of silk-spinning in amphipods. This is the first comprehensive study on the glandular systems of Ampeliscidae, Synopiidae, and Paragammaropsidae using advanced microscopy, providing pertinent morphological data to the study of arthropod silk gland evolution and complex traits.

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Proximity as a Ground-Truth Proxy for Training Texture Discrimination and Segmentation

Geisler, W. S.

2026-05-15 animal behavior and cognition 10.64898/2026.05.12.724620 medRxiv
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Perceptual systems in humans and many other animals are able to segment scenes into regions that are likely to be physically meaningful. This ability depends on having low-level mechanisms that can accurately categorize whether local image patches are samples from the same or different kinds of texture. We find that using spatial proximity as a proxy for same-different ground truth makes it possible to train accurate decision variables and bounds directly from arbitrary natural images with no feedback. We also find that performance can be further improved by using proximity as a ground truth for adjusting the final decision variables and bounds for the current image/scene. These surprising findings result from the simple fact that under a wide range of conditions proximity discrimination (near vs. far) and texture discrimination (same vs. different) have mathematically identical decision bounds if the same image features are used for both tasks. We used the decision variables and bounds trained on natural images as the initial steps in a hierarchical Bayesian observer (HBO) model of texture discrimination [9]. Given the relative simplicity of this HBO model, it did an excellent job of segmenting images having randomly shaped regions containing arbitrary natural textures. We suggest that the proximity proxy is something that natural selection could discover and exploit for any same-different task where the task-relevant stimulus features also vary systematically with distance in space and/or time. For example, natural selection could have created developmental learning/plasticity mechanisms that exploit the proximity proxy.

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When advantage turns into risk: disentangling landscape and behavioural drivers of socioeconomic inequality in Lyme disease risk, Glasgow as a case study

Gandy, S. L.; Plahe, G.; Hall, J.; Watkinson, K.; Guntupalli, S.; Johnson, D.; Birtles, R.; Mavin, S.; Gilbert, L.

2026-05-21 public and global health 10.64898/2026.05.18.26353476 medRxiv
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Introduction: Socioeconomic deprivation is often associated with poorer health outcomes, but some studies suggest the opposite for Lyme disease. Here we test two hypotheses to explain this: differences in (i) local landcover of high risk habitats such as woodlands (landscape hypothesis) and (ii) outdoor recreation in such habitats (behaviour hypothesis). Methods: We analysed reported Lyme disease incidence data for 824 data zones in the city of Glasgow, UK, against deprivation rank (based on indicators relating to income, employment, health, education, crime and housing). We then tested how these relate to woodland cover and indices of urban greenspace usage (per capita and per ha of greenspace). Additionally, we measured Lyme disease hazard (density of infected ticks) in 32 greenspaces and tested relationships with deprivation, woodland and greenspace usage. Results: More advantaged data zones (data zones with low deprivation rank) had higher Lyme disease incidence. These areas had more woodland and woodland cover was positively correlated with both Lyme disease incidence and hazard. Deprivation did not correlate with greenspace usage, nor did greenspace usage correlate with Lyme disease incidence. Intensely used greenspaces had lower infected tick densities, consistent with a human disturbance effect on wildlife that carry ticks. Conclusions: Differences in woodland cover, but not outdoor recreation behaviour, can help explain our finding of higher Lyme disease incidence in more advantaged areas. However, to further test the behaviour hypothesis, we need more detailed data on outdoor recreation activity per capita both locally and in rural areas, as well data on mitigation behaviours.

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Exploring sources of uncertainty in the estimate of waterfowl harvest in the United Kingdom

Ellis, M. B.; Lewis, H. M.; Cameron, T. C.

2026-05-14 ecology 10.64898/2026.05.13.724812 medRxiv
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There is an urgent need to gather data on harvest rates of waterbirds in Europe to assess the sustainability of hunting. Estimates of total waterbird harvest in the United Kingdom (UK) and the relative harvest of different huntable species come from two separate surveys, the Value of Shooting (PACEC 2014) and National Gamebag Census (NGC, Aebischer 2019), and these have been recently used to explore the likelihood of unsustainable harvests of wild waterbirds by UK hunters (Ellis and Cameron 2022; Madden et al., 2025). The reliability of these sustainability estimates depends on how representative the original surveys are of hunter behaviour and success. There are also 1-3 million released game-farm mallard (Anas platyrhynchos) that takes up considerable and unquantified proportions of the UK waterbird harvest. Here we explore uncertainties in the UK winter harvest of wild waterfowl by comparing estimates from the NGC dataset with those from the Crown Estate coastal hunting clubs, and a novel approach using analysis of social-media images (2019/20 to 2023/24). We explore the difference in species-specific harvest with and without the uncertainties in the number of released mallard and the total number of duck harvested in the UK. Waterbird harvest estimates differ markedly depending on the input dataset and whether released mallard are included in the analysis. Confidence intervals of each estimate are inflated by uncertainties in the number of released game-farm mallard contributing to, and the size of that national bag. Estimates extrapolated from social media suggest the national harvest of several species may be considerably larger than the corresponding NGC estimates (e.g. Teal *2.07 and gadwall *11.2), while mallard harvests away from formal shoots represented by NGC are significantly lower (*0.71). Excluding released mallard reduces the statistical estimate of total wild duck harvest by 56-63%, which would have biologically significant effects if realised.

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TRENDS-Thai: decadal trends of dengue, chikungunya, and hand, foot, and mouth disease in Thailand (2016-2025): a multi-disease time-series analysis of COVID-19 disruption

Pongpirul, W.; Ahmed, M. M.; Pongpirul, K.

2026-05-24 infectious diseases 10.64898/2026.05.21.26353796 medRxiv
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Introduction: Dengue, chikungunya, and hand, foot, and mouth disease (HFMD) are priority notifiable infections in Thailand. Whether vector-borne and contact-mediated diseases responded differently to the coronavirus disease 2019 pandemic has not been quantified within a unified national surveillance framework over an extended period. Methods: We conducted an ecological interrupted time-series analysis using weekly province-level notifiable disease surveillance data from epidemiological week 1 of 2016 to week 53 of 2025 across all 77 Thai provinces. Incidence per 100,000 population was calculated using year-specific civil registration population denominators. Segmented quasi-Poisson regression with two Fourier harmonics for annual seasonality was fitted, with the primary pandemic onset defined as week 1 of 2020 and two alternative onset definitions prespecified for sensitivity analysis. Results: The analysis included 40,579 province-week observations across 527 epidemiological weeks, comprising 790,263 dengue, 32,265 chikungunya, and 713,822 HFMD cases nationally. Immediate incidence rate ratios at pandemic onset were 0.39, 0.54, and 0.51 for dengue, chikungunya, and HFMD, respectively. Sustained post-onset trends diverged across diseases, with declining trajectories for the two vector-borne infections and a positive post-onset slope for hand, foot, and mouth disease. Dengue rebounded above pre-pandemic levels by 2023, chikungunya remained quiescent through 2025, and HFMD exceeded its pre-pandemic baseline by approximately 26%. Conclusion: Vector-borne and contact-mediated diseases in Thailand followed sharply contrasting decadal trajectories that tracked the transmission ecologies of each pathogen. These findings support transmission-mode-specific pandemic-resilient surveillance, accelerated arboviral and enteroviral vaccine deployment, and integrated vector management.

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The cost-effectiveness of testing and quarantine strategies to contain epidemic spread during the Hajj pilgrimage: A modelling study

Wardle, J.; Cori, A.; Hauck, K.; Nouvellet, P.; Bhatia, S.

2026-06-02 epidemiology 10.64898/2026.06.01.26354577 medRxiv
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The Hajj is an annual pilgrimage made by millions of Muslims to Mecca in the Kingdom of Saudi Arabia (KSA). The large number of international attendees at the Hajj increases the risk of global infectious disease spread. However, we know very little about the benefits, costs, and cost-effectiveness of testing and quarantining strategies to contain epidemic spread during mass gathering events. In this work we developed a stochastic discrete-time compartmental metapopulation model to simulate international epidemics of infectious pathogens and their potential importation into KSA during the Hajj. We used the model and an epidemic simulation study to evaluate the impact and cost-effectiveness of three testing and quarantining strategies for arriving pilgrims: randomly testing 99% of pilgrims, 80% of pilgrims, or using a symptom-based screening strategy. The simulations lasted 100 days, covering the 30 days before the Hajj and 65 days after the Hajj. Under the conditions assumed in our simulation study, there was strong evidence that testing and quarantining strategies are cost-effective measures for controlling epidemic threats at the Hajj. The median net monetary benefits of intervention strategies ranged from Intl$-41.89M [95% quantile range Intl$-42.37M to Intl$3.18B] to Intl$12.68B [Intl$-8.70B to Intl$13.82B] across scenarios with different pathogen characteristics (based on the natural histories of SARS-CoV-2 and H1N1 Influenza) and epidemic seed locations. Our results were sensitive to the data sources that were used to estimate the number of pilgrims travelling to KSA by origin country, with flight passenger statistics providing biased estimates of pilgrim numbers. Our work provides an adaptable tool to inform infectious disease risk assessments and evaluate the cost-effectiveness of possible disease control measures for the Hajj, and could be extended to other mass gathering events.